| Rank | Splice | Gene | # obs. | log(E) | EC | MGI | Start | End | Strand | Band | Description |
| 13 | ENSMUSP00000069364 | ENSMUSG00000053211 | 48 | -43.4 | 2 | Zfy1 | 725128 | 797409 | -1 | A1 | zinc finger protein 1, Y linked |
| 14 | ENSMUSP00000140600 | ENSMUSG00000053211 | 22 | -43.4 | 2 | Zfy1 | 725128 | 797409 | -1 | A1 | zinc finger protein 1, Y linked |
| 3 | ENSMUSP00000111560 | ENSMUSG00000069053 | 4935 | -304.5 | 4 | Uba1y | 818649 | 844224 | 1 | A1 | ubiquitin-activating enzyme, Chr Y |
| 9 | ENSMUSP00000140543 | ENSMUSG00000069053 | 2919 | -185.6 | 4 | Uba1y | 818649 | 844224 | 1 | A1 | ubiquitin-activating enzyme, Chr Y |
| 11 | ENSMUSP00000061095 | ENSMUSG00000056673 | 336 | -62 | 4 | Kdm5d | 897788 | 956786 | 1 | A1 | lysine (K)-specific demethylase 5D |
| 12 | ENSMUSP00000140663 | ENSMUSG00000056673 | 139 | -53.4 | 4 | Kdm5d | 897788 | 956786 | 1 | A1 | lysine (K)-specific demethylase 5D |
| 15 | ENSMUSP00000140462 | ENSMUSG00000056673 | 90 | -39.8 | 4 | Kdm5d | 897788 | 956786 | 1 | A1 | lysine (K)-specific demethylase 5D |
| 16 | ENSMUSP00000139636 | ENSMUSG00000056673 | 90 | -39.8 | 4 | Kdm5d | 897788 | 956786 | 1 | A1 | lysine (K)-specific demethylase 5D |
| 2 | ENSMUSP00000088736 | ENSMUSG00000069049 | 4927 | -387.5 | 4 | Eif2s3y | 1010543 | 1028847 | 1 | A1 | eukaryotic translation initiation factor 2, subunit 3, structural gene Y-linked |
| 5 | ENSMUSP00000070012 | ENSMUSG00000068457 | 183 | -235.8 | 4 | Uty | 1096861 | 1245759 | -1 | A1 | ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome |
| 6 | ENSMUSP00000114910 | ENSMUSG00000068457 | 181 | -220.1 | 4 | Uty | 1096861 | 1245759 | -1 | A1 | ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome |
| 7 | ENSMUSP00000114752 | ENSMUSG00000068457 | 172 | -220.1 | 4 | Uty | 1096861 | 1245759 | -1 | A1 | ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome |
| 8 | ENSMUSP00000115113 | ENSMUSG00000068457 | 152 | -201.3 | 4 | Uty | 1096861 | 1245759 | -1 | A1 | ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome |
| 10 | ENSMUSP00000119406 | ENSMUSG00000068457 | 27 | -115.4 | 4 | Uty | 1096861 | 1245759 | -1 | A1 | ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome |
| 130 | ENSMUSP00000122818 | ENSMUSG00000068457 | 2 | -9 | 2 | Uty | 1096861 | 1245759 | -1 | A1 | ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome |
| 131 | ENSMUSP00000116372 | ENSMUSG00000068457 | 1 | -9 | 2 | Uty | 1096861 | 1245759 | -1 | A1 | ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome |
| 132 | ENSMUSP00000120069 | ENSMUSG00000068457 | 2 | -9 | 2 | Uty | 1096861 | 1245759 | -1 | A1 | ubiquitously transcribed tetratricopeptide repeat gene, Y chromosome |
| 1 | ENSMUSP00000088729 | ENSMUSG00000069045 | 8130 | -1033 | 4 | Ddx3y | 1260771 | 1286629 | -1 | A1 | DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked |
| 23 | ENSMUSP00000140361 | ENSMUSG00000069045 | 139 | -15 | 4 | Ddx3y | 1260771 | 1286629 | -1 | A1 | DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked |
| 4 | ENSMUSP00000088727 | ENSMUSG00000069044 | 2221 | -286 | 4 | Usp9y | 1298961 | 1459782 | -1 | A1 | ubiquitin specific peptidase 9, Y chromosome |
| 21 | ENSMUSP00000111557 | ENSMUSG00000000103 | 56 | -22.5 | 2 | Zfy2 | 2106015 | 2170409 | -1 | A1 | zinc finger protein 2, Y linked |
| 22 | ENSMUSP00000139591 | ENSMUSG00000000103 | 24 | -22.5 | 2 | Zfy2 | 2106015 | 2170409 | -1 | A1 | zinc finger protein 2, Y linked |
| 137 | ENSMUSP00000126567 | ENSMUSG00000094881 | 5 | -4.3 | 2 | Gm6026 | 2599099 | 2599434 | 1 | A1 | predicted gene 6026 |
| 77 | ENSMUSP00000088717 | ENSMUSG00000069036 | 59 | -10.9 | 3 | Sry | 2662471 | 2663658 | -1 | A1 | sex determining region of Chr Y |
| 138 | ENSMUSP00000132924 | ENSMUSG00000095573 | 5 | -4.3 | 2 | Gm16501 | 2720339 | 2720674 | -1 | A1 | predicted gene 16501 |
| 147 | ENSMUSP00000140512 | ENSMUSG00000102053 | 6 | -2.9 | 2 | Gm4064 | 2785165 | 2796205 | -1 | A1 | predicted gene 4064 |
| 76 | ENSMUSP00000097930 | ENSMUSG00000094658 | 5 | -11.2 | 2 | Rbmy | 2830680 | 2841854 | 1 | A1 | RNA binding motif protein, Y chromosome |
| 150 | ENSMUSP00000130080 | ENSMUSG00000094658 | 3 | -2.9 | 2 | Rbmy | 2830680 | 2841854 | 1 | A1 | RNA binding motif protein, Y chromosome |
| 141 | ENSMUSP00000140037 | ENSMUSG00000095852 | 6 | -2.9 | 2 | Gm10256 | 2830699 | 2873492 | 1 | A1 | predicted gene 10256 |
| 143 | ENSMUSP00000136632 | ENSMUSG00000095852 | 6 | -2.9 | 2 | Gm10256 | 2830699 | 2873492 | 1 | A1 | predicted gene 10256 |
| 148 | ENSMUSP00000140936 | ENSMUSG00000095852 | 6 | -2.9 | 2 | Gm10256 | 2830699 | 2873492 | 1 | A1 | predicted gene 10256 |
| 154 | ENSMUSP00000129935 | ENSMUSG00000091987 | 6 | -2.9 | 2 | Gm10352 | 2900989 | 2912206 | 1 | A1 | predicted gene 10352 |
| 157 | ENSMUSP00000140575 | ENSMUSG00000091987 | 6 | -2.9 | 2 | Gm10352 | 2900989 | 2912206 | 1 | A1 | predicted gene 10352 |
| 260 | ENSMUSP00000139969 | ENSMUSG00000101667 | 2 | -2.1 | 2 | Gm29289 | 2932582 | 2939416 | 1 | A1 | predicted gene 29289 |
| 142 | ENSMUSP00000139527 | ENSMUSG00000093918 | 3 | -2.9 | 2 | Gm21677 | 3294976 | 3306449 | -1 | A1 | predicted gene, 21677 |
| 146 | ENSMUSP00000136939 | ENSMUSG00000093918 | 3 | -2.9 | 2 | Gm21677 | 3294976 | 3306449 | -1 | A1 | predicted gene, 21677 |
| 152 | ENSMUSP00000136819 | ENSMUSG00000094511 | 3 | -2.9 | 2 | Gm21693 | 3326750 | 3345329 | -1 | A1 | predicted gene, 21693 |
| 155 | ENSMUSP00000139784 | ENSMUSG00000094511 | 3 | -2.9 | 2 | Gm21693 | 3326750 | 3345329 | -1 | A1 | predicted gene, 21693 |
| 151 | ENSMUSP00000140704 | ENSMUSG00000093987 | 3 | -2.9 | 2 | Gm21704 | 3367147 | 3410167 | -1 | A1 | predicted gene, 21704 |
| 158 | ENSMUSP00000129249 | ENSMUSG00000093987 | 3 | -2.9 | 2 | Gm21704 | 3367147 | 3410167 | -1 | A1 | predicted gene, 21704 |
| 140 | ENSMUSP00000137266 | ENSMUSG00000095948 | 3 | -2.9 | 2 | Gm21708 | 3399188 | 3410167 | -1 | A1 | predicted gene, 21708 |
| 145 | ENSMUSP00000140216 | ENSMUSG00000095948 | 3 | -2.9 | 2 | Gm21708 | 3399188 | 3410167 | -1 | A1 | predicted gene, 21708 |
| 153 | ENSMUSP00000139659 | ENSMUSG00000095948 | 3 | -2.9 | 2 | Gm21708 | 3399188 | 3410167 | -1 | A1 | predicted gene, 21708 |
| 139 | ENSMUSP00000141183 | ENSMUSG00000096520 | 5 | -2.9 | 2 | Gm3376 | 3771673 | 3783267 | 1 | A1 | predicted gene 3376 |
| 156 | ENSMUSP00000136808 | ENSMUSG00000096520 | 5 | -2.9 | 2 | Gm3376 | 3771673 | 3783267 | 1 | A1 | predicted gene 3376 |
| 185 | ENSMUSP00000136554 | ENSMUSG00000093927 | 1 | -2.3 | 2 | Gm20918 | 5043937 | 5046265 | 1 | A1 | predicted gene, 20918 |
| 207 | ENSMUSP00000140003 | ENSMUSG00000093927 | 1 | -2.3 | 2 | Gm20918 | 5043937 | 5046265 | 1 | A1 | predicted gene, 20918 |
| 274 | ENSMUSP00000136023 | ENSMUSG00000095693 | 0 | nf | 1 | Gm21820 | 5248359 | 5249441 | -1 | A1 | predicted gene, 21820 |
| 242 | ENSMUSP00000139409 | ENSMUSG00000096706 | 1 | -2.1 | 2 | Gm21854 | 5656986 | 5659574 | 1 | A1 | predicted gene, 21854 |
| 281 | ENSMUSP00000136526 | ENSMUSG00000096706 | 0 | nf | 1 | Gm21854 | 5656986 | 5659574 | 1 | A1 | predicted gene, 21854 |
| 181 | ENSMUSP00000136243 | ENSMUSG00000096268 | 1 | -2.3 | 2 | Gm20914 | 5725978 | 5728317 | 1 | A1 | predicted gene, 20914 |
| 183 | ENSMUSP00000139808 | ENSMUSG00000096268 | 1 | -2.3 | 2 | Gm20914 | 5725978 | 5728317 | 1 | A1 | predicted gene, 20914 |
| 178 | ENSMUSP00000140005 | ENSMUSG00000100634 | 1 | -2.3 | 2 | Gm28171 | 5793395 | 5795728 | 1 | A1 | predicted gene 28171 |
| 236 | ENSMUSP00000139442 | ENSMUSG00000096036 | 1 | -2.1 | 2 | Gm21778 | 5942460 | 5945031 | 1 | A1 | predicted gene, 21778 |
| 304 | ENSMUSP00000136470 | ENSMUSG00000096036 | 0 | nf | 1 | Gm21778 | 5942460 | 5945031 | 1 | A1 | predicted gene, 21778 |
| 270 | ENSMUSP00000136361 | ENSMUSG00000094346 | 1 | -1 | 1 | Gm21746 | 6237453 | 6237995 | -1 | A1 | predicted gene, 21746 |
| 243 | ENSMUSP00000140138 | ENSMUSG00000095148 | 1 | -2.1 | 2 | Gm20873 | 6267098 | 6269548 | 1 | A1 | predicted gene, 20873 |
| 256 | ENSMUSP00000136403 | ENSMUSG00000095148 | 1 | -2.1 | 2 | Gm20873 | 6267098 | 6269548 | 1 | A1 | predicted gene, 20873 |
| 57 | ENSMUSP00000139611 | ENSMUSG00000101243 | 7 | -13.5 | 4 | Gm28919 | 6583546 | 6615511 | 1 | A1 | predicted gene 28919 |
| 144 | ENSMUSP00000129824 | ENSMUSG00000079806 | 7 | -2.9 | 2 | Gm21719 | 6680421 | 6682872 | -1 | A1 | predicted gene, 21719 |
| 149 | ENSMUSP00000139615 | ENSMUSG00000079806 | 6 | -2.9 | 2 | Gm21719 | 6680421 | 6682872 | -1 | A1 | predicted gene, 21719 |
| 160 | ENSMUSP00000141026 | ENSMUSG00000096686 | 1 | -2.8 | 2 | Gm20830 | 6916300 | 6918282 | -1 | A1 | predicted gene, 20830 |
| 161 | ENSMUSP00000135925 | ENSMUSG00000096686 | 1 | -2.8 | 2 | Gm20830 | 6916300 | 6918282 | -1 | A1 | predicted gene, 20830 |
| 267 | ENSMUSP00000139421 | ENSMUSG00000094484 | 1 | -1.1 | 1 | Gm21244 | 7165068 | 7169293 | -1 | A1 | predicted gene, 21244 |
| 268 | ENSMUSP00000137217 | ENSMUSG00000094484 | 1 | -1.1 | 1 | Gm21244 | 7165068 | 7169293 | -1 | A1 | predicted gene, 21244 |
| 89 | ENSMUSP00000140653 | ENSMUSG00000100939 | 7 | -9.9 | 4 | Gm28998 | 7253787 | 7280017 | 1 | A1 | predicted gene 28998 |
| 272 | ENSMUSP00000136752 | ENSMUSG00000095602 | 1 | 0 | 1 | Gm21788 | 7405010 | 7405552 | 1 | A1 | predicted gene, 21788 |
| 266 | ENSMUSP00000140488 | ENSMUSG00000094081 | 1 | -1.1 | 1 | Gm20826 | 7632774 | 7638489 | -1 | A1 | predicted gene, 20826 |
| 269 | ENSMUSP00000137147 | ENSMUSG00000094081 | 1 | -1.1 | 1 | Gm20826 | 7632774 | 7638489 | -1 | A1 | predicted gene, 20826 |
| 94 | ENSMUSP00000140720 | ENSMUSG00000100645 | 7 | -9.9 | 4 | Gm28576 | 7722941 | 7749195 | 1 | A1 | predicted gene 28576 |
| 214 | ENSMUSP00000141109 | ENSMUSG00000099861 | 1 | -2.3 | 2 | Gm29049 | 7994833 | 7997168 | -1 | A1 | predicted gene 29049 |
| 201 | ENSMUSP00000136231 | ENSMUSG00000095324 | 1 | -2.3 | 2 | Gm20825 | 8069168 | 8071507 | -1 | A1 | predicted gene, 20825 |
| 204 | ENSMUSP00000136143 | ENSMUSG00000095324 | 1 | -2.3 | 2 | Gm20825 | 8069168 | 8071507 | -1 | A1 | predicted gene, 20825 |
| 72 | ENSMUSP00000140952 | ENSMUSG00000101928 | 3 | -13.5 | 2 | Gm20824 | 8257907 | 8284105 | 1 | A1 | predicted gene, 20824 |
| 134 | ENSMUSP00000111158 | ENSMUSG00000101053 | 3 | -4.9 | 2 | Gm20815 | 8832821 | 8835169 | -1 | A1 | predicted gene, 20815 |
| 133 | ENSMUSP00000131393 | ENSMUSG00000091077 | 2 | -4.9 | 2 | Gm21292 | 9130999 | 9133924 | -1 | A1 | predicted gene, 21292 |
| 213 | ENSMUSP00000139843 | ENSMUSG00000091077 | 1 | -2.3 | 2 | Gm21292 | 9130999 | 9133924 | -1 | A1 | predicted gene, 21292 |
| 172 | ENSMUSP00000136336 | ENSMUSG00000094679 | 1 | -2.3 | 2 | Gm21721 | 9199824 | 9202190 | -1 | A1 | predicted gene, 21721 |
| 203 | ENSMUSP00000139987 | ENSMUSG00000094679 | 1 | -2.3 | 2 | Gm21721 | 9199824 | 9202190 | -1 | A1 | predicted gene, 21721 |
| 159 | ENSMUSP00000140302 | ENSMUSG00000094773 | 2 | -2.8 | 2 | Gm21812 | 9344836 | 9347184 | -1 | A1 | predicted gene, 21812 |
| 162 | ENSMUSP00000136639 | ENSMUSG00000094773 | 2 | -2.8 | 2 | Gm21812 | 9344836 | 9347184 | -1 | A1 | predicted gene, 21812 |
| 234 | ENSMUSP00000139963 | ENSMUSG00000096223 | 1 | -2.1 | 2 | Gm21874 | 9413518 | 9416148 | -1 | A1 | predicted gene, 21874 |
| 244 | ENSMUSP00000137027 | ENSMUSG00000096223 | 1 | -2.1 | 2 | Gm21874 | 9413518 | 9416148 | -1 | A1 | predicted gene, 21874 |
| 202 | ENSMUSP00000136629 | ENSMUSG00000094556 | 1 | -2.3 | 2 | Gm20821 | 9781804 | 9784197 | 1 | A1 | predicted gene, 20821 |
| 208 | ENSMUSP00000137322 | ENSMUSG00000094556 | 1 | -2.3 | 2 | Gm20821 | 9781804 | 9784197 | 1 | A1 | predicted gene, 20821 |
| 250 | ENSMUSP00000137593 | ENSMUSG00000095032 | 1 | -2.1 | 2 | Gm21310 | 10144735 | 10147183 | -1 | A1 | predicted gene, 21310 |
| 251 | ENSMUSP00000139580 | ENSMUSG00000095032 | 1 | -2.1 | 2 | Gm21310 | 10144735 | 10147183 | -1 | A1 | predicted gene, 21310 |
| 297 | ENSMUSP00000136150 | ENSMUSG00000095242 | 0 | nf | 1 | Gm20834 | 10322618 | 10324589 | -1 | A1 | predicted gene, 20834 |
| 302 | ENSMUSP00000140814 | ENSMUSG00000095242 | 0 | nf | 1 | Gm20834 | 10322618 | 10324589 | -1 | A1 | predicted gene, 20834 |
| 81 | ENSMUSP00000139602 | ENSMUSG00000101396 | 7 | -9.9 | 4 | Gm28510 | 10412737 | 10444691 | 1 | A1 | predicted gene 28510 |
| 249 | ENSMUSP00000139604 | ENSMUSG00000095950 | 1 | -2.1 | 2 | Gm20737 | 10533609 | 10536042 | -1 | A1 | predicted gene, 20737 |
| 258 | ENSMUSP00000136272 | ENSMUSG00000095950 | 1 | -2.1 | 2 | Gm20737 | 10533609 | 10536042 | -1 | A1 | predicted gene, 20737 |
| 301 | ENSMUSP00000135909 | ENSMUSG00000095860 | 0 | nf | 1 | Gm21775 | 10553453 | 10553992 | 1 | A1 | predicted gene, 21775 |
| 271 | ENSMUSP00000137084 | ENSMUSG00000094867 | 1 | -1 | 1 | Gm21900 | 10616361 | 10616903 | 1 | A1 | predicted gene, 21900 |
| 239 | ENSMUSP00000140872 | ENSMUSG00000094813 | 1 | -2.1 | 2 | Gm20777 | 10750004 | 10752450 | -1 | A1 | predicted gene, 20777 |
| 257 | ENSMUSP00000136036 | ENSMUSG00000094813 | 1 | -2.1 | 2 | Gm20777 | 10750004 | 10752450 | -1 | A1 | predicted gene, 20777 |
| 191 | ENSMUSP00000129237 | ENSMUSG00000094838 | 1 | -2.3 | 2 | Gm20828 | 11197024 | 11199374 | -1 | A1 | predicted gene, 20828 |
| 296 | ENSMUSP00000139764 | ENSMUSG00000094838 | 0 | nf | 1 | Gm20828 | 11197024 | 11199374 | -1 | A1 | predicted gene, 20828 |
| 105 | ENSMUSP00000139522 | ENSMUSG00000100231 | 7 | -9.9 | 4 | Gm29554 | 12273932 | 12306702 | 1 | A1 | predicted gene 29554 |
| 290 | ENSMUSP00000139838 | ENSMUSG00000095508 | 0 | nf | 1 | Gm20812 | 12381981 | 12384008 | 1 | A1 | predicted gene, 20812 |
| 299 | ENSMUSP00000137553 | ENSMUSG00000095508 | 0 | nf | 1 | Gm20812 | 12381981 | 12384008 | 1 | A1 | predicted gene, 20812 |
| 177 | ENSMUSP00000137227 | ENSMUSG00000094299 | 1 | -2.3 | 2 | Gm21736 | 12564112 | 12564780 | 1 | A1 | predicted gene, 21736 |
| 18 | ENSMUSP00000136068 | ENSMUSG00000094135 | 1828 | -28.9 | 4 | Gm21379 | 12688110 | 12690064 | 1 | A1 | predicted gene, 21379 |
| 231 | ENSMUSP00000136646 | ENSMUSG00000095769 | 1 | -2.2 | 2 | Gm21891 | 13132950 | 13133492 | -1 | A1 | predicted gene, 21891 |
| 246 | ENSMUSP00000137250 | ENSMUSG00000096820 | 1 | -2.1 | 2 | Gm21425 | 13163582 | 13164280 | 1 | A1 | predicted gene, 21425 |
| 229 | ENSMUSP00000136822 | ENSMUSG00000095759 | 1 | -2.2 | 2 | Gm21828 | 13223386 | 13223928 | -1 | A1 | predicted gene, 21828 |
| 237 | ENSMUSP00000136379 | ENSMUSG00000093903 | 1 | -2.1 | 2 | Gm20910 | 13252442 | 13378797 | 1 | A1 | predicted gene, 21440 |
| 225 | ENSMUSP00000136374 | ENSMUSG00000095462 | 1 | -2.2 | 2 | Gm21725 | 13348521 | 13349063 | -1 | A1 | predicted gene, 21725 |
| 226 | ENSMUSP00000136288 | ENSMUSG00000093883 | 1 | -2.2 | 2 | Gm21866 | 13465037 | 13465579 | -1 | A1 | predicted gene, 21866 |
| 241 | ENSMUSP00000137200 | ENSMUSG00000095900 | 1 | -2.1 | 2 | Gm20773 | 13495642 | 13496322 | 1 | A1 | predicted gene, 20773 |
| 254 | ENSMUSP00000136115 | ENSMUSG00000094492 | 1 | -2.1 | 2 | Gm20836 | 13910343 | 13911041 | -1 | A1 | predicted gene, 20836 |
| 295 | ENSMUSP00000137436 | ENSMUSG00000094227 | 0 | nf | 1 | Gm21767 | 13941738 | 13942280 | 1 | A1 | predicted gene, 21767 |
| 179 | ENSMUSP00000130886 | ENSMUSG00000095172 | 1 | -2.3 | 2 | Gm20822 | 15882421 | 15884771 | -1 | A1 | predicted gene, 20822 |
| 303 | ENSMUSP00000139707 | ENSMUSG00000095172 | 0 | nf | 1 | Gm20822 | 15882421 | 15884771 | -1 | A1 | predicted gene, 20822 |
| 300 | ENSMUSP00000137507 | ENSMUSG00000094829 | 0 | nf | 1 | Gm21809 | 16923791 | 16924258 | 1 | A1 | predicted gene, 21809 |
| 135 | ENSMUSP00000097682 | ENSMUSG00000095520 | 2 | -4.9 | 2 | Gm20877 | 17093873 | 17095892 | 1 | A1 | predicted gene, 20877 |
| 293 | ENSMUSP00000139965 | ENSMUSG00000095520 | 0 | nf | 1 | Gm20877 | 17093873 | 17095892 | 1 | A1 | predicted gene, 20877 |
| 170 | ENSMUSP00000136126 | ENSMUSG00000095421 | 1 | -2.3 | 2 | Gm20781 | 17275991 | 17276674 | 1 | A1 | predicted gene, 20781 |
| 17 | ENSMUSP00000136781 | ENSMUSG00000095365 | 1828 | -28.9 | 4 | Rbm31y | 17400761 | 17402718 | 1 | A1 | RNA binding motif 31, Y-linked |
| 228 | ENSMUSP00000136284 | ENSMUSG00000094161 | 1 | -2.2 | 2 | Gm21904 | 17845724 | 17846266 | -1 | A1 | predicted gene, 21904 |
| 252 | ENSMUSP00000139540 | ENSMUSG00000094325 | 1 | -2.1 | 2 | Gm20772 | 17874741 | 17967596 | 1 | A1 | predicted gene, 20772 |
| 253 | ENSMUSP00000136638 | ENSMUSG00000094325 | 1 | -2.1 | 2 | Gm20831 | 17874741 | 17967596 | 1 | A1 | predicted gene, 20831 |
| 232 | ENSMUSP00000136342 | ENSMUSG00000096819 | 1 | -2.2 | 2 | Srsy | 17935713 | 17937330 | -1 | A1 | serine-rich, secreted, Y-linked |
| 233 | ENSMUSP00000136798 | ENSMUSG00000095879 | 1 | -2.2 | 2 | Gm21764 | 18061270 | 18061812 | -1 | A1 | predicted gene, 21764 |
| 248 | ENSMUSP00000137527 | ENSMUSG00000095267 | 1 | -2.1 | 2 | Ssty1 | 18089116 | 18091556 | 1 | A1 | spermiogenesis specific transcript on the Y 1 |
| 261 | ENSMUSP00000139883 | ENSMUSG00000095267 | 1 | -2.1 | 2 | Ssty1 | 18089116 | 18091556 | 1 | A1 | spermiogenesis specific transcript on the Y 1 |
| 238 | ENSMUSP00000136264 | ENSMUSG00000095050 | 1 | -2.1 | 2 | Gm20851 | 18208481 | 18209161 | 1 | A1 | predicted gene, 20851 |
| 247 | ENSMUSP00000137095 | ENSMUSG00000094046 | 1 | -2.1 | 2 | Gm21660 | 18623064 | 18623762 | -1 | A1 | predicted gene, 21660 |
| 289 | ENSMUSP00000137501 | ENSMUSG00000095927 | 0 | nf | 1 | Gm21822 | 18654482 | 18655024 | 1 | A1 | predicted gene, 21822 |
| 275 | ENSMUSP00000136306 | ENSMUSG00000094022 | 0 | nf | 1 | Gm21763 | 19514331 | 19515014 | -1 | A1 | predicted gene, 21763 |
| 240 | ENSMUSP00000137606 | ENSMUSG00000095775 | 1 | -2.1 | 2 | Gm20910 | 21096898 | 21097596 | 1 | A2 | predicted gene, 20910 |
| 187 | ENSMUSP00000137876 | ENSMUSG00000094294 | 1 | -2.3 | 2 | Gm20909 | 21164570 | 21166905 | 1 | A2 | predicted gene, 20909 |
| 222 | ENSMUSP00000137500 | ENSMUSG00000094294 | 1 | -2.3 | 2 | Gm20909 | 21164570 | 21166905 | 1 | A2 | predicted gene, 20909 |
| 171 | ENSMUSP00000136326 | ENSMUSG00000093848 | 1 | -2.3 | 2 | Gm20865 | 21241575 | 21243910 | 1 | A2 | predicted gene, 20865 |
| 211 | ENSMUSP00000138020 | ENSMUSG00000093848 | 1 | -2.3 | 2 | Gm20865 | 21241575 | 21243910 | 1 | A2 | predicted gene, 20865 |
| 200 | ENSMUSP00000136114 | ENSMUSG00000094611 | 1 | -2.3 | 2 | Gm21065 | 22513860 | 22514543 | 1 | A2 | predicted gene, 21065 |
| 286 | ENSMUSP00000136648 | ENSMUSG00000096545 | 0 | nf | 1 | Gm21871 | 22964859 | 22965485 | 1 | A2 | predicted gene, 21871 |
| 198 | ENSMUSP00000137389 | ENSMUSG00000095622 | 1 | -2.3 | 2 | Gm21469 | 23031235 | 23031918 | 1 | A2 | predicted gene, 21469 |
| 167 | ENSMUSP00000136712 | ENSMUSG00000095237 | 2 | -2.3 | 2 | Gm21661 | 23097865 | 23098548 | 1 | A2 | predicted gene, 21661 |
| 136 | ENSMUSP00000136576 | ENSMUSG00000096443 | 2 | -4.3 | 2 | Gm21907 | 23240330 | 23240956 | 1 | A2 | predicted gene, 21907 |
| 219 | ENSMUSP00000137397 | ENSMUSG00000094166 | 1 | -2.3 | 2 | Gm20925 | 23306767 | 23307450 | 1 | A2 | predicted gene, 20925 |
| 217 | ENSMUSP00000137242 | ENSMUSG00000095733 | 1 | -2.3 | 2 | Gm20926 | 23381504 | 23382187 | 1 | A2 | predicted gene, 20926 |
| 262 | ENSMUSP00000136389 | ENSMUSG00000094617 | 1 | -1.8 | 1 | Gm21768 | 23802239 | 23802865 | 1 | A2 | predicted gene, 21768 |
| 188 | ENSMUSP00000135944 | ENSMUSG00000095271 | 1 | -2.3 | 2 | Gm20840 | 23868563 | 23869246 | 1 | A2 | predicted gene, 20840 |
| 221 | ENSMUSP00000136468 | ENSMUSG00000094479 | 1 | -2.3 | 2 | Gm21845 | 24381817 | 24382500 | 1 | A2 | predicted gene, 21845 |
| 186 | ENSMUSP00000137177 | ENSMUSG00000093868 | 2 | -2.3 | 2 | Gm20809 | 24455057 | 24457399 | 1 | A2 | predicted gene, 20809 |
| 218 | ENSMUSP00000140802 | ENSMUSG00000093868 | 1 | -2.3 | 2 | Gm20809 | 24455057 | 24457399 | 1 | A2 | predicted gene, 20809 |
| 287 | ENSMUSP00000136538 | ENSMUSG00000094911 | 0 | nf | 1 | Gm21921 | 24795161 | 24796243 | -1 | A2 | predicted gene, 21921 |
| 176 | ENSMUSP00000136044 | ENSMUSG00000096116 | 1 | -2.3 | 2 | Gm21350 | 24894925 | 24895608 | 1 | A2 | predicted gene, 21350 |
| 175 | ENSMUSP00000136088 | ENSMUSG00000096657 | 2 | -2.3 | 2 | Gm21412 | 24969606 | 24970289 | 1 | A2 | predicted gene, 21412 |
| 278 | ENSMUSP00000136679 | ENSMUSG00000094939 | 0 | nf | 1 | Gm21773 | 25308278 | 25309360 | -1 | A2 | predicted gene, 21773 |
| 166 | ENSMUSP00000137138 | ENSMUSG00000096103 | 1 | -2.3 | 2 | Gm21791 | 25408061 | 25408744 | 1 | A2 | predicted gene, 21791 |
| 224 | ENSMUSP00000137302 | ENSMUSG00000094223 | 2 | -2.3 | 2 | Gm21427 | 25482701 | 25483384 | 1 | A2 | predicted gene, 21427 |
| 223 | ENSMUSP00000137511 | ENSMUSG00000094014 | 1 | -2.3 | 2 | Gm21890 | 25921142 | 25921825 | 1 | A2 | predicted gene, 21890 |
| 220 | ENSMUSP00000135912 | ENSMUSG00000095439 | 2 | -2.3 | 2 | Gm21443 | 25995644 | 25996633 | 1 | A2 | predicted gene, 21443 |
| 127 | ENSMUSP00000140218 | ENSMUSG00000100055 | 7 | -9.9 | 4 | Gm20890 | 26750605 | 26776799 | -1 | A2 | predicted gene, 20890 |
| 101 | ENSMUSP00000140532 | ENSMUSG00000099541 | 7 | -9.9 | 4 | Gm21488 | 27495726 | 27521920 | -1 | A2 | predicted gene, 21488 |
| 69 | ENSMUSP00000141039 | ENSMUSG00000101158 | 8 | -13.5 | 4 | Gm20894 | 28245352 | 28271512 | -1 | A2 | predicted gene, 20894 |
| 93 | ENSMUSP00000136773 | ENSMUSG00000094869 | 26 | -9.9 | 4 | Gm21679 | 29655497 | 29683370 | -1 | A2 | predicted gene, 21679 |
| 118 | ENSMUSP00000139915 | ENSMUSG00000100467 | 8 | -9.9 | 4 | Gm29582 | 30706533 | 30738561 | -1 | A2 | predicted gene 29582 |
| 99 | ENSMUSP00000140770 | ENSMUSG00000094789 | 8 | -9.9 | 4 | Gm28490 | 31602724 | 31634756 | -1 | A2 | predicted gene 28490 |
| 120 | ENSMUSP00000136022 | ENSMUSG00000094789 | 26 | -9.9 | 4 | Gm28490 | 31602724 | 31634756 | -1 | A2 | predicted gene 28490 |
| 85 | ENSMUSP00000141113 | ENSMUSG00000095263 | 8 | -9.9 | 4 | Gm21094 | 32588415 | 32620443 | -1 | A2 | predicted gene, 21094 |
| 91 | ENSMUSP00000136851 | ENSMUSG00000095263 | 26 | -9.9 | 4 | Gm21094 | 32588415 | 32620443 | -1 | A2 | predicted gene, 21094 |
| 79 | ENSMUSP00000140626 | ENSMUSG00000095011 | 8 | -9.9 | 4 | Gm20838 | 33511116 | 33543164 | -1 | B | predicted gene, 20838 |
| 112 | ENSMUSP00000136992 | ENSMUSG00000095011 | 26 | -9.9 | 4 | Gm20838 | 33511116 | 33543164 | -1 | B | predicted gene, 20838 |
| 30 | ENSMUSP00000137350 | ENSMUSG00000095793 | 25 | -13.5 | 4 | Gm20855 | 35105684 | 35131833 | -1 | B | predicted gene, 20855 |
| 73 | ENSMUSP00000140500 | ENSMUSG00000095793 | 8 | -13.5 | 4 | Gm20855 | 35105684 | 35131833 | -1 | B | predicted gene, 20855 |
| 26 | ENSMUSP00000139596 | ENSMUSG00000096650 | 8 | -13.5 | 4 | Gm20896 | 35895328 | 35921526 | -1 | B | predicted gene, 20896 |
| 47 | ENSMUSP00000137594 | ENSMUSG00000096650 | 25 | -13.5 | 4 | Gm20896 | 35895328 | 35921526 | -1 | B | predicted gene, 20896 |
| 41 | ENSMUSP00000140944 | ENSMUSG00000101933 | 8 | -13.5 | 4 | Gm20835 | 36709098 | 36735290 | -1 | B | predicted gene, 20835 |
| 34 | ENSMUSP00000140730 | ENSMUSG00000101157 | 8 | -13.5 | 4 | Gm20905 | 37233420 | 37259603 | -1 | B | predicted gene, 20905 |
| 169 | ENSMUSP00000136636 | ENSMUSG00000094575 | 2 | -2.3 | 2 | Gm20738 | 37957811 | 37960145 | 1 | B | predicted gene, 20738 |
| 43 | ENSMUSP00000140689 | ENSMUSG00000100892 | 8 | -13.5 | 4 | Gm20897 | 38476061 | 38502238 | -1 | B | predicted gene, 20897 |
| 298 | ENSMUSP00000136161 | ENSMUSG00000096379 | 0 | nf | 1 | Gm21732 | 38574609 | 38575691 | -1 | B | predicted gene, 21732 |
| 100 | ENSMUSP00000136800 | ENSMUSG00000093895 | 24 | -9.9 | 4 | Gm21865 | 40290790 | 40316903 | -1 | B | predicted gene, 21865 |
| 102 | ENSMUSP00000140679 | ENSMUSG00000093895 | 7 | -9.9 | 4 | Gm21865 | 40290790 | 40316903 | -1 | B | predicted gene, 21865 |
| 288 | ENSMUSP00000136641 | ENSMUSG00000094354 | 0 | nf | 1 | Gm21882 | 40380441 | 40381523 | -1 | B | predicted gene, 21882 |
| 227 | ENSMUSP00000137379 | ENSMUSG00000096533 | 1 | -2.2 | 2 | Gm21852 | 40651454 | 40651996 | -1 | B | predicted gene, 21852 |
| 273 | ENSMUSP00000136989 | ENSMUSG00000096885 | 0 | nf | 1 | Gm21797 | 40775223 | 40775765 | -1 | B | predicted gene, 21797 |
| 235 | ENSMUSP00000136073 | ENSMUSG00000095452 | 1 | -2.1 | 2 | Gm20795 | 40804914 | 40807356 | 1 | B | predicted gene, 20795 |
| 245 | ENSMUSP00000139666 | ENSMUSG00000095452 | 1 | -2.1 | 2 | Gm20795 | 40804914 | 40807356 | 1 | B | predicted gene, 20795 |
| 230 | ENSMUSP00000136321 | ENSMUSG00000096120 | 1 | -2.2 | 2 | Gm21800 | 41406498 | 41407040 | 1 | B | predicted gene, 21800 |
| 114 | ENSMUSP00000139523 | ENSMUSG00000101471 | 7 | -9.9 | 4 | Gm29276 | 42550083 | 42582250 | -1 | B | predicted gene 29276 |
| 95 | ENSMUSP00000140604 | ENSMUSG00000094181 | 8 | -9.9 | 4 | Gm21739 | 44232123 | 44264444 | -1 | B | predicted gene, 21739 |
| 110 | ENSMUSP00000137088 | ENSMUSG00000094181 | 26 | -9.9 | 4 | Gm21739 | 44232123 | 44264444 | -1 | B | predicted gene, 21739 |
| 294 | ENSMUSP00000136130 | ENSMUSG00000095353 | 0 | nf | 1 | Gm21783 | 44980580 | 44981263 | -1 | B | predicted gene, 21783 |
| 113 | ENSMUSP00000135931 | ENSMUSG00000094782 | 26 | -9.9 | 4 | Gm21256 | 47450960 | 47482990 | 1 | C1 | predicted gene, 21256 |
| 119 | ENSMUSP00000140938 | ENSMUSG00000094782 | 8 | -9.9 | 4 | Gm21256 | 47450960 | 47482990 | 1 | C1 | predicted gene, 21256 |
| 82 | ENSMUSP00000136783 | ENSMUSG00000094170 | 24 | -9.9 | 4 | Gm21170 | 47669242 | 47691098 | -1 | C1 | predicted gene, 21170 |
| 108 | ENSMUSP00000140983 | ENSMUSG00000101653 | 8 | -9.9 | 4 | Gm20792 | 48311855 | 48343871 | 1 | C1 | predicted gene, 20792 |
| 126 | ENSMUSP00000139793 | ENSMUSG00000100972 | 7 | -9.9 | 4 | Gm28553 | 48856497 | 48882617 | 1 | C1 | predicted gene 28553 |
| 36 | ENSMUSP00000139400 | ENSMUSG00000095979 | 8 | -13.5 | 4 | Gm21209 | 49571156 | 49597425 | 1 | C1 | predicted gene, 21209 |
| 111 | ENSMUSP00000136754 | ENSMUSG00000095979 | 27 | -9.9 | 4 | Gm21209 | 49571156 | 49597425 | 1 | C1 | predicted gene, 21209 |
| 56 | ENSMUSP00000140542 | ENSMUSG00000102122 | 8 | -13.5 | 4 | Gm20883 | 50608251 | 50634461 | 1 | C1 | predicted gene, 20883 |
| 35 | ENSMUSP00000139807 | ENSMUSG00000096769 | 8 | -13.5 | 4 | Gm21117 | 51125220 | 51151484 | 1 | C1 | predicted gene, 21117 |
| 45 | ENSMUSP00000136710 | ENSMUSG00000096769 | 25 | -13.5 | 4 | Gm21117 | 51125220 | 51151484 | 1 | C1 | predicted gene, 21117 |
| 54 | ENSMUSP00000140677 | ENSMUSG00000100485 | 8 | -13.5 | 4 | Gm20920 | 51852120 | 51878300 | 1 | C1 | predicted gene, 20920 |
| 52 | ENSMUSP00000139882 | ENSMUSG00000095606 | 8 | -13.5 | 4 | Gm21258 | 52780040 | 52806254 | 1 | C1 | predicted gene, 21258 |
| 97 | ENSMUSP00000136718 | ENSMUSG00000095606 | 27 | -9.9 | 4 | Gm21258 | 52780040 | 52806254 | 1 | C1 | predicted gene, 21258 |
| 184 | ENSMUSP00000139491 | ENSMUSG00000094729 | 1 | -2.3 | 2 | Gm20747 | 53415953 | 53418291 | -1 | C1 | predicted gene, 20747 |
| 212 | ENSMUSP00000136937 | ENSMUSG00000094729 | 1 | -2.3 | 2 | Gm20747 | 53415953 | 53418291 | -1 | C1 | predicted gene, 20747 |
| 48 | ENSMUSP00000139649 | ENSMUSG00000100045 | 8 | -13.5 | 4 | Gm20929 | 53843949 | 53870150 | 1 | C1 | predicted gene, 20929 |
| 40 | ENSMUSP00000137051 | ENSMUSG00000094570 | 25 | -13.5 | 4 | Gm20931 | 55213720 | 55239871 | 1 | C2 | predicted gene, 20931 |
| 53 | ENSMUSP00000140468 | ENSMUSG00000094570 | 8 | -13.5 | 4 | Gm20931 | 55213720 | 55239871 | 1 | C2 | predicted gene, 20931 |
| 84 | ENSMUSP00000135983 | ENSMUSG00000095135 | 24 | -9.9 | 4 | Gm21858 | 55731756 | 55757908 | 1 | C2 | predicted gene, 21858 |
| 103 | ENSMUSP00000140010 | ENSMUSG00000095135 | 7 | -9.9 | 4 | Gm21858 | 55731756 | 55757908 | 1 | C2 | predicted gene, 21858 |
| 51 | ENSMUSP00000140340 | ENSMUSG00000101155 | 8 | -13.5 | 4 | Sly | 57187188 | 57213362 | 1 | C2 | Sycp3 like Y-linked |
| 87 | ENSMUSP00000139451 | ENSMUSG00000101155 | 4 | -9.9 | 4 | Sly | 57187188 | 57213362 | 1 | C2 | Sycp3 like Y-linked |
| 90 | ENSMUSP00000141149 | ENSMUSG00000101155 | 6 | -9.9 | 4 | Sly | 57187188 | 57213362 | 1 | C2 | Sycp3 like Y-linked |
| 216 | ENSMUSP00000136356 | ENSMUSG00000096122 | 1 | -2.3 | 2 | Gm21943 | 57531412 | 57533744 | -1 | C2 | predicted gene, 21943 |
| 128 | ENSMUSP00000139697 | ENSMUSG00000101399 | 5 | -9.6 | 2 | Gm28961 | 57705697 | 57731932 | 1 | C2 | predicted gene 28961 |
| 80 | ENSMUSP00000137215 | ENSMUSG00000096626 | 26 | -9.9 | 4 | Gm21861 | 58782567 | 58814597 | -1 | C2 | predicted gene, 21861 |
| 92 | ENSMUSP00000139535 | ENSMUSG00000096626 | 8 | -9.9 | 4 | Gm21861 | 58782567 | 58814597 | -1 | C2 | predicted gene, 21861 |
| 83 | ENSMUSP00000140248 | ENSMUSG00000095141 | 8 | -9.9 | 4 | Gm28891 | 60241202 | 60273250 | 1 | C2 | predicted gene 28891 |
| 116 | ENSMUSP00000136562 | ENSMUSG00000095141 | 26 | -9.9 | 4 | Gm28891 | 60241202 | 60273250 | 1 | C2 | predicted gene 28891 |
| 78 | ENSMUSP00000140263 | ENSMUSG00000100667 | 8 | -9.9 | 4 | Gm21563 | 61102247 | 61134259 | 1 | C2 | predicted gene, 21563 |
| 104 | ENSMUSP00000140668 | ENSMUSG00000100726 | 7 | -9.9 | 4 | Gm21497 | 61646746 | 61672861 | 1 | C2 | predicted gene, 21497 |
| 71 | ENSMUSP00000140794 | ENSMUSG00000094821 | 8 | -13.5 | 4 | Gm21518 | 62190866 | 62217137 | 1 | C3 | predicted gene, 21518 |
| 98 | ENSMUSP00000136187 | ENSMUSG00000094821 | 27 | -9.9 | 4 | Gm21518 | 62190866 | 62217137 | 1 | C3 | predicted gene, 21518 |
| 180 | ENSMUSP00000136451 | ENSMUSG00000093950 | 2 | -2.3 | 2 | Gm20823 | 62462504 | 62464845 | -1 | C3 | predicted gene, 20823 |
| 62 | ENSMUSP00000140851 | ENSMUSG00000100856 | 8 | -13.5 | 4 | Gm21627 | 63228427 | 63254644 | 1 | C3 | predicted gene, 21627 |
| 65 | ENSMUSP00000140733 | ENSMUSG00000101766 | 8 | -13.5 | 4 | Gm20908 | 64473266 | 64499452 | 1 | C3 | predicted gene, 20908 |
| 193 | ENSMUSP00000139614 | ENSMUSG00000095785 | 2 | -2.3 | 2 | Gm20924 | 65205185 | 65207527 | -1 | C3 | predicted gene, 20924 |
| 206 | ENSMUSP00000137639 | ENSMUSG00000095785 | 2 | -2.3 | 2 | Gm20924 | 65205185 | 65207527 | -1 | C3 | predicted gene, 20924 |
| 63 | ENSMUSP00000140139 | ENSMUSG00000093993 | 8 | -13.5 | 4 | Gm20736 | 65377690 | 65403917 | 1 | C3 | predicted gene, 20736 |
| 106 | ENSMUSP00000136973 | ENSMUSG00000093993 | 27 | -9.9 | 4 | Gm20736 | 65377690 | 65403917 | 1 | C3 | predicted gene, 20736 |
| 124 | ENSMUSP00000139870 | ENSMUSG00000093993 | 6 | -9.9 | 4 | Gm20736 | 65377690 | 65403917 | 1 | C3 | predicted gene, 20736 |
| 194 | ENSMUSP00000140403 | ENSMUSG00000096666 | 1 | -2.3 | 2 | Gm20852 | 66739787 | 66742123 | -1 | C3 | predicted gene, 20852 |
| 209 | ENSMUSP00000135934 | ENSMUSG00000096666 | 1 | -2.3 | 2 | Gm20852 | 66739787 | 66742123 | -1 | C3 | predicted gene, 20852 |
| 165 | ENSMUSP00000139505 | ENSMUSG00000095302 | 1 | -2.3 | 2 | Ssty2 | 67045743 | 67048072 | -1 | C3 | spermiogenesis specific transcript on the Y 2 |
| 189 | ENSMUSP00000137417 | ENSMUSG00000095302 | 1 | -2.3 | 2 | Ssty2 | 67045743 | 67048072 | -1 | C3 | spermiogenesis specific transcript on the Y 2 |
| 39 | ENSMUSP00000140064 | ENSMUSG00000096016 | 8 | -13.5 | 4 | Gm20937 | 68268651 | 68294898 | -1 | C3 | predicted gene, 20937 |
| 117 | ENSMUSP00000136591 | ENSMUSG00000096016 | 27 | -9.9 | 4 | Gm20937 | 68268651 | 68294898 | -1 | C3 | predicted gene, 20937 |
| 123 | ENSMUSP00000139975 | ENSMUSG00000096016 | 6 | -9.9 | 4 | Gm20937 | 68268651 | 68294898 | -1 | C3 | predicted gene, 20937 |
| 195 | ENSMUSP00000137306 | ENSMUSG00000095634 | 2 | -2.3 | 2 | Gm20816 | 68537955 | 68540290 | 1 | C3 | predicted gene, 20816 |
| 199 | ENSMUSP00000140326 | ENSMUSG00000095634 | 1 | -2.3 | 2 | Gm20816 | 68537955 | 68540290 | 1 | C3 | predicted gene, 20816 |
| 86 | ENSMUSP00000140565 | ENSMUSG00000100032 | 7 | -9.9 | 4 | Gm20817 | 68806596 | 68832728 | -1 | C3 | predicted gene, 20817 |
| 163 | ENSMUSP00000139506 | ENSMUSG00000099550 | 4 | -2.3 | 2 | Orly | 70004208 | 70014899 | -1 | C3 | oppositely-transcribed, rearranged locus on the Y |
| 264 | ENSMUSP00000139670 | ENSMUSG00000099550 | 2 | -1.2 | 1 | Orly | 70004208 | 70014899 | -1 | C3 | oppositely-transcribed, rearranged locus on the Y |
| 265 | ENSMUSP00000139495 | ENSMUSG00000099550 | 2 | -1.2 | 1 | Orly | 70004208 | 70014899 | -1 | C3 | oppositely-transcribed, rearranged locus on the Y |
| 277 | ENSMUSP00000140429 | ENSMUSG00000099550 | 0 | nf | 1 | Orly | 70004208 | 70014899 | -1 | C3 | oppositely-transcribed, rearranged locus on the Y |
| 174 | ENSMUSP00000140466 | ENSMUSG00000094052 | 1 | -2.3 | 2 | Gm21118 | 70271306 | 70273642 | -1 | C3 | predicted gene, 21118 |
| 190 | ENSMUSP00000137343 | ENSMUSG00000094052 | 1 | -2.3 | 2 | Gm21118 | 70271306 | 70273642 | -1 | C3 | predicted gene, 21118 |
| 263 | ENSMUSP00000139765 | ENSMUSG00000099530 | 3 | -1.4 | 1 | Gm29644 | 70271306 | 70303343 | -1 | C3 | predicted gene 29644 |
| 276 | ENSMUSP00000140691 | ENSMUSG00000101725 | 0 | nf | 1 | Gm29423 | 70292585 | 70303287 | -1 | C3 | predicted gene 29423 |
| 279 | ENSMUSP00000141061 | ENSMUSG00000101725 | 0 | nf | 1 | 70292585 | 70303287 | -1 | C3 | ||
| 280 | ENSMUSP00000139984 | ENSMUSG00000101725 | 0 | nf | 1 | 70292585 | 70303287 | -1 | C3 | ||
| 282 | ENSMUSP00000140960 | ENSMUSG00000101725 | 0 | nf | 1 | 70292585 | 70303287 | -1 | C3 | ||
| 283 | ENSMUSP00000139436 | ENSMUSG00000101725 | 0 | nf | 1 | Gm29423 | 70292585 | 70303287 | -1 | C3 | predicted gene 29423 |
| 284 | ENSMUSP00000139415 | ENSMUSG00000101725 | 0 | nf | 1 | 70292585 | 70303287 | -1 | C3 | ||
| 291 | ENSMUSP00000141155 | ENSMUSG00000101725 | 0 | nf | 1 | Gm29423 | 70292585 | 70303287 | -1 | C3 | predicted gene 29423 |
| 75 | ENSMUSP00000140067 | ENSMUSG00000094616 | 8 | -13.5 | 4 | Gm20888 | 70441882 | 70468158 | 1 | C3 | predicted gene, 20888 |
| 122 | ENSMUSP00000137536 | ENSMUSG00000094616 | 27 | -9.9 | 4 | Gm20888 | 70441882 | 70468158 | 1 | C3 | predicted gene, 20888 |
| 49 | ENSMUSP00000139478 | ENSMUSG00000099531 | 8 | -13.5 | 4 | Gm20869 | 71469449 | 71495632 | 1 | C3 | predicted gene, 20869 |
| 61 | ENSMUSP00000139722 | ENSMUSG00000100535 | 8 | -13.5 | 4 | Gm20870 | 71692043 | 71718226 | 1 | C3 | predicted gene, 20870 |
| 59 | ENSMUSP00000140105 | ENSMUSG00000096902 | 8 | -13.5 | 4 | Gm20843 | 72220863 | 72247118 | -1 | C3 | predicted gene, 20843 |
| 121 | ENSMUSP00000136575 | ENSMUSG00000096902 | 27 | -9.9 | 4 | Gm20843 | 72220863 | 72247118 | -1 | C3 | predicted gene, 20843 |
| 28 | ENSMUSP00000141119 | ENSMUSG00000099782 | 8 | -13.5 | 4 | Gm20903 | 73669315 | 73695486 | 1 | D | predicted gene, 20903 |
| 46 | ENSMUSP00000140088 | ENSMUSG00000101528 | 7 | -13.5 | 4 | Gm29110 | 74470531 | 74496958 | 1 | D | predicted gene 29110 |
| 255 | ENSMUSP00000135928 | ENSMUSG00000094507 | 1 | -2.1 | 2 | Gm21913 | 74623896 | 74624978 | 1 | D | predicted gene, 21913 |
| 31 | ENSMUSP00000140666 | ENSMUSG00000101146 | 8 | -13.5 | 4 | Gm20814 | 75195856 | 75222058 | 1 | D | predicted gene, 20814 |
| 27 | ENSMUSP00000141004 | ENSMUSG00000100902 | 8 | -13.5 | 4 | Gm20850 | 75715322 | 75741549 | 1 | D | predicted gene, 20850 |
| 259 | ENSMUSP00000137326 | ENSMUSG00000094404 | 1 | -2.1 | 2 | Gm21776 | 76378662 | 76379744 | 1 | D | predicted gene, 21776 |
| 109 | ENSMUSP00000140477 | ENSMUSG00000100708 | 7 | -9.9 | 4 | Gm21173 | 76761600 | 76787729 | 1 | D | predicted gene, 21173 |
| 42 | ENSMUSP00000141092 | ENSMUSG00000094647 | 8 | -13.5 | 4 | Gm21650 | 77692808 | 77719038 | 1 | D | predicted gene, 21650 |
| 125 | ENSMUSP00000137112 | ENSMUSG00000094647 | 27 | -9.9 | 4 | Gm21650 | 77692808 | 77719038 | 1 | D | predicted gene, 21650 |
| 168 | ENSMUSP00000136459 | ENSMUSG00000096898 | 2 | -2.3 | 2 | Gm20867 | 77960873 | 77963204 | -1 | D | predicted gene, 20867 |
| 196 | ENSMUSP00000139713 | ENSMUSG00000096898 | 1 | -2.3 | 2 | Gm20867 | 77960873 | 77963204 | -1 | D | predicted gene, 20867 |
| 74 | ENSMUSP00000139621 | ENSMUSG00000099792 | 7 | -13.5 | 4 | Gm29564 | 78212993 | 78239189 | 1 | D | predicted gene 29564 |
| 173 | ENSMUSP00000136000 | ENSMUSG00000094739 | 1 | -2.3 | 2 | Gm20806 | 78835721 | 78838056 | -1 | D | predicted gene, 20806 |
| 182 | ENSMUSP00000141047 | ENSMUSG00000094739 | 1 | -2.3 | 2 | Gm20806 | 78835721 | 78838056 | -1 | D | predicted gene, 20806 |
| 192 | ENSMUSP00000140501 | ENSMUSG00000095867 | 1 | -2.3 | 2 | Gm20917 | 79148789 | 79151122 | -1 | D | predicted gene, 20917 |
| 215 | ENSMUSP00000137546 | ENSMUSG00000095867 | 1 | -2.3 | 2 | Gm20917 | 79148789 | 79151122 | -1 | D | predicted gene, 20917 |
| 44 | ENSMUSP00000140607 | ENSMUSG00000094746 | 8 | -13.5 | 4 | Gm20916 | 79319565 | 79345707 | 1 | D | predicted gene, 20916 |
| 60 | ENSMUSP00000136085 | ENSMUSG00000094746 | 25 | -13.5 | 4 | Gm20916 | 79319565 | 79345707 | 1 | D | predicted gene, 20916 |
| 33 | ENSMUSP00000137009 | ENSMUSG00000095578 | 24 | -13.5 | 4 | Gm21760 | 80133779 | 80159975 | 1 | D | predicted gene, 21760 |
| 37 | ENSMUSP00000140706 | ENSMUSG00000095578 | 7 | -13.5 | 4 | Gm21760 | 80133779 | 80159975 | 1 | D | predicted gene, 21760 |
| 50 | ENSMUSP00000140644 | ENSMUSG00000099740 | 7 | -13.5 | 4 | Gm28897 | 80926995 | 80953258 | 1 | D | predicted gene 28897 |
| 55 | ENSMUSP00000141161 | ENSMUSG00000099894 | 3 | -13.5 | 2 | Gm20911 | 81458007 | 81484087 | 1 | D | predicted gene, 20911 |
| 66 | ENSMUSP00000140162 | ENSMUSG00000101286 | 8 | -13.5 | 4 | Gm21317 | 82225227 | 82251419 | 1 | D | predicted gene, 21317 |
| 32 | ENSMUSP00000139992 | ENSMUSG00000099925 | 7 | -13.5 | 4 | Gm28827 | 83030947 | 83057301 | 1 | D | predicted gene 28827 |
| 64 | ENSMUSP00000136961 | ENSMUSG00000095153 | 25 | -13.5 | 4 | Gm21095 | 84097279 | 84123494 | 1 | E | predicted gene, 21095 |
| 70 | ENSMUSP00000140431 | ENSMUSG00000095153 | 8 | -13.5 | 4 | Gm21095 | 84097279 | 84123494 | 1 | E | predicted gene, 21095 |
| 197 | ENSMUSP00000136571 | ENSMUSG00000094660 | 2 | -2.3 | 2 | Gm21394 | 84562572 | 84564907 | -1 | E | predicted gene, 21394 |
| 210 | ENSMUSP00000141090 | ENSMUSG00000094660 | 2 | -2.3 | 2 | Gm21394 | 84562572 | 84564907 | -1 | E | predicted gene, 21394 |
| 29 | ENSMUSP00000140850 | ENSMUSG00000099840 | 8 | -13.5 | 4 | Gm21409 | 84746685 | 84772902 | 1 | E | predicted gene, 21409 |
| 164 | ENSMUSP00000136905 | ENSMUSG00000095650 | 1 | -2.3 | 2 | Gm20854 | 85528517 | 85530908 | -1 | E | predicted gene, 20854 |
| 205 | ENSMUSP00000138074 | ENSMUSG00000095650 | 1 | -2.3 | 2 | Gm20854 | 85528517 | 85530908 | -1 | E | predicted gene, 20854 |
| 38 | ENSMUSP00000139858 | ENSMUSG00000100240 | 5 | -13.5 | 2 | Gm20820 | 86061772 | 86087952 | 1 | E | predicted gene, 20820 |
| 58 | ENSMUSP00000135953 | ENSMUSG00000094399 | 25 | -13.5 | 4 | Gm21477 | 87116821 | 87142917 | 1 | E | predicted gene, 21477 |
| 67 | ENSMUSP00000140238 | ENSMUSG00000094399 | 8 | -13.5 | 4 | Gm21477 | 87116821 | 87142917 | 1 | E | predicted gene, 21477 |
| 68 | ENSMUSP00000140305 | ENSMUSG00000099856 | 8 | -13.5 | 4 | Gm20906 | 87550966 | 87575691 | 1 | E | predicted gene, 20906 |
| 129 | ENSMUSP00000140242 | ENSMUSG00000101915 | 5 | -9.6 | 2 | Gm28102 | 88053315 | 88079494 | 1 | E | predicted gene 28102 |
| 88 | ENSMUSP00000140933 | ENSMUSG00000102045 | 9 | -9.9 | 4 | Gm21294 | 89052806 | 89079015 | 1 | E | predicted gene, 21294 |
| 115 | ENSMUSP00000141173 | ENSMUSG00000100608 | 8 | -9.9 | 4 | Gm21996 | 89713424 | 89745532 | -1 | E | predicted gene 21996 |
| 96 | ENSMUSP00000139688 | ENSMUSG00000096178 | 6 | -9.9 | 4 | Gm20837 | 90401248 | 90433263 | 1 | E | predicted gene, 20837 |
| 107 | ENSMUSP00000137363 | ENSMUSG00000096178 | 26 | -9.9 | 4 | Gm20837 | 90401248 | 90433263 | 1 | E | predicted gene, 20837 |
| 285 | ENSMUSP00000136050 | ENSMUSG00000095366 | 0 | nf | 1 | Gm21860 | 90754513 | 90754821 | -1 | E | predicted gene, 21860 |
| 19 | ENSMUSP00000136353 | ENSMUSG00000096768 | 20 | -24.5 | 4 | Erdr1 | 90784738 | 90816464 | 1 | E | erythroid differentiation regulator 1 |
| 20 | ENSMUSP00000137050 | ENSMUSG00000096768 | 15 | -23 | 4 | Erdr1 | 90784738 | 90816464 | 1 | E | erythroid differentiation regulator 1 |
| 24 | ENSMUSP00000136097 | ENSMUSG00000096768 | 13 | -14.6 | 4 | Erdr1 | 90784738 | 90816464 | 1 | E | erythroid differentiation regulator 1 |
| 25 | ENSMUSP00000137622 | ENSMUSG00000096768 | 14 | -14.6 | 4 | Erdr1 | 90784738 | 90816464 | 1 | E | erythroid differentiation regulator 1 |
| 292 | ENSMUSP00000137361 | ENSMUSG00000096850 | 0 | nf | 1 | Gm21748 | 90838869 | 90839177 | -1 | E | predicted gene, 21748 |