Paths
../tandem/taxonomy.xml
/usr/local/tandem/method.xml
Spectrum general
0.4
Da
The value for this parameter may be 'Daltons' or 'ppm': all other values are ignored
100
100
ppm
yes
Spectrum conditioning
100.0
50
yes
yes
15.0
466.0
500.0
150.0
15
1
Residue modification
57@C
16@M
Protein general
human
[RK]|{P}
+17.00305
+1.00794
0.0
0.0
Scoring
4
1
yes
yes
model refinement paramters
yes
yes
0.1
+42.0@[
yes
16@M,1@N,1@Q
no
no
Output
output.xml
protein
values = protein|spectrum (spectrum is the default)
no
values = yes|no
tandem-style.xsl
yes
values = yes|no
yes
values = yes|no
yes
values = yes|no
yes
values = yes|no
yes
values = yes|no
yes
values = yes|no
valid
values = all|valid|stochastic
0.1
value is used in the valid|stochastic setting of output, results
30
values any integer greater than 0. Setting this to '1' makes cutting and pasting histograms
into spread sheet programs easier.