| Rank | Splice | Gene | # obs. | log(E) | EC | MGI | Start | End | Strand | Band | Description |
| 5 | ENSMUSP00000080991 | ENSMUSG00000064341 | 1805 | -154.8 | 4 | mt-Nd1 | 2751 | 3707 | 1 | mt-Nd1, mitochondrially encoded NADH dehydrogenase 1 | |
| 7 | ENSMUSP00000080992 | ENSMUSG00000064345 | 847 | -96.3 | 4 | mt-Nd2 | 3914 | 4951 | 1 | mt-Nd2, mitochondrially encoded NADH dehydrogenase 2 | |
| 3 | ENSMUSP00000080993 | ENSMUSG00000064351 | 1267 | -264.4 | 4 | mt-Co1 | 5328 | 6872 | 1 | mt-Co1, mitochondrially encoded cytochrome c oxidase I | |
| 1 | ENSMUSP00000080994 | ENSMUSG00000064354 | 5505 | -574.9 | 4 | mt-Co2 | 7013 | 7696 | 1 | mt-Co2, mitochondrially encoded cytochrome c oxidase II | |
| 9 | ENSMUSP00000080995 | ENSMUSG00000064356 | 3208 | -70.8 | 4 | mt-Atp8 | 7766 | 7969 | 1 | mt-Atp8, mitochondrially encoded ATP synthase 8 | |
| 8 | ENSMUSP00000080996 | ENSMUSG00000064357 | 370 | -81.8 | 4 | mt-Atp6 | 7927 | 8607 | 1 | mt-Atp6, mitochondrially encoded ATP synthase 6 | |
| 10 | ENSMUSP00000080997 | ENSMUSG00000064358 | 784 | -64.4 | 4 | mt-Co3 | 8607 | 9390 | 1 | mt-Co3, mitochondrially encoded cytochrome c oxidase III | |
| 11 | ENSMUSP00000080998 | ENSMUSG00000064360 | 1086 | -50.4 | 4 | mt-Nd3 | 9459 | 9806 | 1 | mt-Nd3, mitochondrially encoded NADH dehydrogenase 3 | |
| 12 | ENSMUSP00000081021 | ENSMUSG00000065947 | 281 | -44 | 4 | mt-Nd4l | 9877 | 10173 | 1 | mt-Nd4l, mitochondrially encoded NADH dehydrogenase 4L | |
| 4 | ENSMUSP00000081000 | ENSMUSG00000064363 | 2069 | -204.4 | 4 | mt-Nd4 | 10167 | 11544 | 1 | mt-Nd4, mitochondrially encoded NADH dehydrogenase 4 | |
| 2 | ENSMUSP00000081001 | ENSMUSG00000064367 | 2382 | -334.5 | 4 | mt-Nd5 | 11742 | 13565 | 1 | mt-Nd5, mitochondrially encoded NADH dehydrogenase 5 | |
| 13 | ENSMUSP00000081002 | ENSMUSG00000064368 | 0 | nf | 1 | mt-Nd6 | 13552 | 14070 | -1 | mt-Nd6, mitochondrially encoded NADH dehydrogenase 6 | |
| 6 | ENSMUSP00000081003 | ENSMUSG00000064370 | 923 | -113.9 | 4 | mt-Cytb | 14145 | 15288 | 1 | mt-Cytb, mitochondrially encoded cytochrome b |