Chemical structures | IUPAC naming convention |
Protecting groups | Protecting groups (by AA) |
Solvent accessibility | Post-translation modifications |
for solvent exposed residues | for interior residues |
based on the Dayhoff matrix | the PAM250 matrix |
Chemical classifications | Hydrophobicity scales |
Residue volume, area and pKa | Solubility, density and pI |
Peptide bond geometry | Chou-Fasman parameters |
Bond angles | Residue hydrogen bonding |
The genetic code | Genetic code (non-cannonical) |
Mutation mass shifts | Nucleotide naming conventions |